This comic series was a 6 issue mini series released by Devil's Due with direct connection to the Animated TV Series. Like the Animated TV Series, this comic line does not tie into the continuity of the original G.I. Joe universe. Each issue featured a different G.I. Joe team member against a Cobra operative.
- 1: Duke must rescue a team of oceanographers kidnapped by Destro
- 2: Homecoming. Spirit goes to see his family, but then must stop Zartan from stealing the sacred Klesh Staff.
- 3: Widgets. Tunnel Rat is captured by Overkill. Now he must escape and face Overkill and his B.A.T.s without his Sigma suit.
- 4: High Fashion. Scarlett has to protect prime minister Vargas from the Baroness and the Dreadnoks.
- 5: Big Time: Heavy Duty and Long Range must face Cobra Commander in Japan.
- 6: Kumite: Storm Shadow steals a valuable chip, but accepts to give it to Snake-Eyes if he defeats him in the Shadow Kumite tournament.